PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03305.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 367aa    MW: 41514.5 Da    PI: 5.3484
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03305.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.11.1e-26127192171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++l+ ++e+g ++ln++a+ L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Rsa1.0_03305.1_g00007.1 127 RYDSSLGLLTKKFVNLIIEAEDGSLDLNHCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 192
                              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-28123194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-32127192IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-17127190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.3E-24129192IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.22E-39203310No hitNo description
SuperFamilySSF1440742.62E-28203309No hitNo description
PfamPF164215.0E-26208307IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAATSKSGED PSLSYTHPPP FSFDLLQSLD PRHPPSSTNR TFSVSEPLPN AQSPQIQAQS  60
YSPITHQFKN RNIPGETIDI AKVIVKQESP LENLKRGNKS KVTKLSKASV KREAQQLGGP  120
NGSNNCRYDS SLGLLTKKFV NLIIEAEDGS LDLNHCADVL EVQKRRIYDI TNVLEGIGLI  180
EKTTKNHIRW KGADNLGHLE LGDQISRLKL EVESLQSEES RLDDLIRERQ TALRSLEEDE  240
CSRRYMFMTE EDITSLPRFQ NKTLLAIKAP TASYIEVPDP DEVLSFPQRQ YRMVIRSRMG  300
PIDVYLLSKY KGENSRETNE SDQNTPTGVD TPSLKIVTSD TDLKTDYWFE SEAEVSLTHL  360
WNTFTEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-23127193774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4000010.0AF400001.1 Thlaspi caerulescens E2F-related transcription factor 2 (E2F2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393509.10.0hypothetical protein EUTSA_v10011567mg
SwissprotQ9FV700.0E2FC_ARATH; Transcription factor E2FC
TrEMBLV4JZ320.0V4JZ32_EUTSA; Uncharacterized protein
STRINGBra014096.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.20.0E2F/DP family protein